QTL Accession ID | AQFA023 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | GRCARWHT |
Trait Name | grain core area white |
Published Symbol | wca3.1 |
Trait Synonym(s) | WCA |
Trait Category | Quality |
Chromosome | 3 |
Comments | The increased effect of this QTL was associated with the 'O. glaberrima' allele. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 35,835,805-35,836,096 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell V20A/glab QTL 2004 | BNL6.32 | 3 | 142.3-142.3 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQFA023 | 3 | 142.3 | 142.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM148 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | CDO87 | RFLP | Avena sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000665) | Li-J et al., 2004 (IAGP) |
Plant Structure | (PO:0009001) | Li-J et al., 2004 (SM) |
(PO:0009010) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007038 ) | Li-J et al., 2004 (SM) |
Growth Stage | (GRO:0007045) | Li-J et al., 2004 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Li-J et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 35,835,805 | 35,836,096 | ~160K SNPs x 20 accessions (McNally 2... | 2 | Search for SNPs |
chr3 | 35,835,805 | 35,836,096 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr3 | 35,835,805 | 35,836,096 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
chr3 | 35,835,805 | 35,836,096 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
chr3 | 35,835,805 | 35,836,096 | RiceDiversity 44K SNP assay, 34 trait... | 0 |