QTL Accession ID | AQE001 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | DTFL | ||||||
Trait Name | days to flower | ||||||
Published Symbol | |||||||
Trait Synonym(s) |
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Trait Category | Development | ||||||
Chromosome | 2 | ||||||
Comments | Genetic population is BC2F2 from cross of O. glumaepatula and O. sativa. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 2 | 2,105,542-20,795,112 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Brazil BG90-2/RS16 QTL 2002 | BNL6.32 | 2 | 28.5-28.5 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQE001 | 2 | 28.5 | 28.5 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM8 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM236 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM262 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000344) | Brondani-C et al., 2002 (IAGP) |
Plant Structure | (PO:0009046) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007016) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007140) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Brondani-C et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr2 | 2,105,542 | 20,795,112 | ~160K SNPs x 20 accessions (McNally 2... | 6,663 | Search for SNPs |
chr2 | 2,105,542 | 20,795,112 | '1536 chip' - 1311 SNPs x 395 rice ac... | 57 | Search for SNPs |
chr2 | 2,105,542 | 20,795,112 | Huang X, et al, Nat Genetics 2010 Nov... | 39,256 | Search for SNPs |
chr2 | 2,105,542 | 20,795,112 | RiceDiversity 44K SNP assay, 34 trait... | 39,256 | Search for SNPs |
chr2 | 2,105,542 | 20,795,112 | RiceDiversity 44K SNP assay, 34 trait... | 1,624 | Search for SNPs |