QTL Accession ID | CQA26 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | VGTM |
Trait Name | vegetative growth time |
Published Symbol | QTL9 |
Trait Synonym(s) | |
Trait Category | Development |
Chromosome | 9 |
Comments | The trait VGTM, is defined as the number of days spent in the vegetative growth stage by the plant. This growth phase also contributes to the total number of days to heading. The QTL was detected by Multiple-trait Composite Interval Mapping (MCIM). |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 9 | 12,885,687-14,649,208 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | FAUF Gui630/Twj DH QTL 2001 | BNL6.32 | 9 | 33-33 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
CQA26 | 9 | 33 | 33 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | C472 | RFLP | Oryza sativa | qtl_marker |
To | C933 | RFLP | Oryza sativa | qtl_marker |
To | R1751 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000369) | Zhou-Y et al., 2001 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007134) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Zhou-Y et al., 2001 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr9 | 12,885,687 | 14,649,208 | ~160K SNPs x 20 accessions (McNally 2... | 492 | Search for SNPs |
chr9 | 12,885,687 | 14,649,208 | '1536 chip' - 1311 SNPs x 395 rice ac... | 7 | Search for SNPs |
chr9 | 12,885,687 | 14,649,208 | Huang X, et al, Nat Genetics 2010 Nov... | 2,689 | Search for SNPs |
chr9 | 12,885,687 | 14,649,208 | RiceDiversity 44K SNP assay, 34 trait... | 2,689 | Search for SNPs |
chr9 | 12,885,687 | 14,649,208 | RiceDiversity 44K SNP assay, 34 trait... | 128 | Search for SNPs |