QTL Accession ID | AQH003 | ||||||
---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||
Trait Symbol | INVRAB | ||||||
Trait Name | invitro regeneration ability | ||||||
Published Symbol | qAGR-3 | ||||||
Trait Synonym(s) |
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Trait Category | Vigor | ||||||
Chromosome | 3 | ||||||
Comments |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 15,644,275-15,646,800 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | KRGRP Mil23/Gih QTL 1998 | BNL6.32 | 3 | 79.7-89.2 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQH003 | 3 | 79.7 | 89.2 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | Gra1 | Gene | Oryza sativa | ISS |
To | RM232 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RZ585 | RFLP | Oryza sativa | qtl_marker |
Species | Accession | Name | Evidence |
---|---|---|---|
Oryza sativa | GR:0061071 | Green plant regeneration in anther culture-1 | KWON-Y et al., 2002 (IAGP) |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000243) | KWON-Y et al., 2002 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007266) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | KWON-Y et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 15,644,275 | 15,646,800 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr3 | 15,644,275 | 15,646,800 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr3 | 15,644,275 | 15,646,800 | Huang X, et al, Nat Genetics 2010 Nov... | 12 | Search for SNPs |
chr3 | 15,644,275 | 15,646,800 | RiceDiversity 44K SNP assay, 34 trait... | 12 | Search for SNPs |
chr3 | 15,644,275 | 15,646,800 | RiceDiversity 44K SNP assay, 34 trait... | 0 |