QTL Accession ID | AQEZ003 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | ALSN | ||||
Trait Name | aluminum sensitivity | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Abiotic stress | ||||
Chromosome | 9 | ||||
Comments | Relative root length after one week Al treatment was measured to evaluate aluminum sensitivity and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 9 | 7,222,547-7,223,222 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNZU IR1552/Azu RI QTL 2004 | BNL6.32 | 9 | 34.4-73.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQEZ003 | 9 | 34.4 | 73.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ698 | RFLP | Oryza sativa | qtl_marker |
To | RG757 | RFLP | Oryza sativa | qtl_marker |
To | RZ422 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000354) | Mao-C-Z et al., 2004 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007306) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Mao-C-Z et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr9 | 7,222,547 | 7,223,222 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr9 | 7,222,547 | 7,223,222 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr9 | 7,222,547 | 7,223,222 | Huang X, et al, Nat Genetics 2010 Nov... | 6 | Search for SNPs |
chr9 | 7,222,547 | 7,223,222 | RiceDiversity 44K SNP assay, 34 trait... | 6 | Search for SNPs |
chr9 | 7,222,547 | 7,223,222 | RiceDiversity 44K SNP assay, 34 trait... | 0 |