![[Home Page]](/images/icons/gramene_logo180new.jpg "[Home Page]"){kind=icon}
QTL Home |
Simple Search |
Power Search |
Help |
Tutorial |
FAQ
Oryza sativa QTL "AQEY005" (1000-seed weight)
| QTL Accession ID | AQEY005 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
| Trait Symbol | TSDWT | ||||||||||
| Trait Name | 1000-seed weight | ||||||||||
| Published Symbol | Kw1-3 | ||||||||||
| Trait Synonym(s) |
|
||||||||||
| Trait Category | Yield | ||||||||||
| Chromosome | 1 | ||||||||||
| Comments | This locus was found to have significant interaction with another locus, AQEY006. It had significant epstatic effects of dominance X dominance at 0.05 level. |
Map Positions (2)
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 31,046,003-31,047,458 bp | View Comparative Map | |||
|
||||||||
| Map Type | Map Set | Name | Map | Position | Ext. Links | |||
|---|---|---|---|---|---|---|---|---|
| QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 1 | 188.9-191.6 cM | View Comparative Map | |||
|
||||||||
QTL DB Map Position (1)
| Name | Chromosome | Start | Stop |
|---|---|---|---|
| AQEY005 | 1 | 188.9 | 191.6 |
Associated Markers (4)
| Direction | Name | Type | Species | Assoc. Type |
|---|---|---|---|---|
| To | G393 | RFLP | Oryza sativa | qtl_marker |
| To | R2201 | RFLP | Oryza sativa | qtl_marker |
| To | RG101 | RFLP | Oryza sativa | qtl_marker |
| To | RM212 | SSR | Oryza sativa Indica Group | qtl_marker |
Associated Genes (0)
Associated Ontologies (6)
| Term Type | Term | Evidence |
|---|---|---|
| Trait Ontology | (TO:0000382) | Gao-Y-M et al., 2004 (IAGP) |
| Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
| Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
| Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
| Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
| Species Ontology | (GR_tax:013681) | Gao-Y-M et al., 2004 (SM) |
Database Cross-References (1)
SNPs (10)
| Chr | Start | Stop | Exp | Num. SNP Positions | |
|---|---|---|---|---|---|
| chr1 | 31,046,003 | 31,047,458 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
| chr1 | 31,046,003 | 31,047,458 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
| chr1 | 31,046,003 | 31,047,458 | Huang X, et al, Nat Genetics 2010 Nov... | 5 | Search for SNPs |
| chr1 | 31,046,003 | 31,047,458 | RiceDiversity 44K SNP assay, 34 trait... | 5 | Search for SNPs |
| chr1 | 31,046,003 | 31,047,458 | RiceDiversity 44K SNP assay, 34 trait... | 0 |
