QTL Accession ID | AQEJ011 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | LFLG |
Trait Name | leaf length |
Published Symbol | qTLL-6 |
Trait Synonym(s) |
FLL flag-leaf length |
Trait Category | Anatomy |
Chromosome | 6 |
Comments | Leaf length of top third leaf was measured to evaluate leaf length and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 2,560,318-3,085,922 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNRRI Zh97B/Mil46 RI QTL 2002 | BNL6.32 | 6 | 33.7-38.3 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQEJ011 | 6 | 33.7 | 38.3 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM197 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RZ516 | RFLP | Oryza sativa | qtl_marker |
To | RM225 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM217 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000135) | Yan-C-J et al., 2003 (IAGP) |
Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Yan-C-J et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 2,560,318 | 3,085,922 | ~160K SNPs x 20 accessions (McNally 2... | 555 | Search for SNPs |
chr6 | 2,560,318 | 3,085,922 | '1536 chip' - 1311 SNPs x 395 rice ac... | 4 | Search for SNPs |
chr6 | 2,560,318 | 3,085,922 | Huang X, et al, Nat Genetics 2010 Nov... | 1,108 | Search for SNPs |
chr6 | 2,560,318 | 3,085,922 | RiceDiversity 44K SNP assay, 34 trait... | 1,108 | Search for SNPs |
chr6 | 2,560,318 | 3,085,922 | RiceDiversity 44K SNP assay, 34 trait... | 103 | Search for SNPs |