QTL Accession ID | AQED041 | ||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||||||||
Trait Symbol | TSDWT | ||||||||||
Trait Name | 1000-seed weight | ||||||||||
Published Symbol | gw1.1 | ||||||||||
Trait Synonym(s) |
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Trait Category | Yield | ||||||||||
Chromosome | 1 | ||||||||||
Comments | The QTL was detected using phenotypic data of the field experiment at the Sukamandi Research Institute for Rice in Sukamandi, Indonesia. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 36,734,135-41,541,798 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Cornell IR64/IRG105 QTL 2003 | BNL6.32 | 1 | 196.4-227.1 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQED041 | 1 | 196.4 | 227.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM315 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM431 | SSR | Oryza sativa Japonica Group | qtl_marker |
To | RM104 | SSR | Oryza sativa | qtl_marker |
To | RG331 | RFLP | Oryza sativa | qtl_marker |
To | RM265 | SSR | Oryza sativa Indica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000382) | Septiningsih-E-M et al., 2003 (IAGP) |
Plant Structure | (PO:0009010) | Septiningsih-E-M et al., 2003 (SM) |
Plant Growth and Development Stage | (PO:0007038 ) | Septiningsih-E-M et al., 2003 (SM) |
Growth Stage | (GRO:0007045) | Septiningsih-E-M et al., 2003 (SM) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Septiningsih-E-M et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 36,734,135 | 41,541,798 | ~160K SNPs x 20 accessions (McNally 2... | 3,437 | Search for SNPs |
chr1 | 36,734,135 | 41,541,798 | '1536 chip' - 1311 SNPs x 395 rice ac... | 17 | Search for SNPs |
chr1 | 36,734,135 | 41,541,798 | Huang X, et al, Nat Genetics 2010 Nov... | 7,056 | Search for SNPs |
chr1 | 36,734,135 | 41,541,798 | RiceDiversity 44K SNP assay, 34 trait... | 7,056 | Search for SNPs |
chr1 | 36,734,135 | 41,541,798 | RiceDiversity 44K SNP assay, 34 trait... | 660 | Search for SNPs |