QTL Accession ID | AQE051 |
---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] |
Trait Symbol | HSDWT |
Trait Name | 100-seed weight |
Published Symbol | |
Trait Synonym(s) | hundred seed weight |
Trait Category | Yield |
Chromosome | 3 |
Comments | Related with yield and yield components. Genetic population is BC2F2 from cross of O. glumaepatula and O. sativa. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 3 | 23,126,064-23,126,256 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | Brazil BG90-2/RS16 QTL 2002 | BNL6.32 | 3 | 135.8-135.8 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQE051 | 3 | 135.8 | 135.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RM16 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM251 | SSR | Oryza sativa Indica Group | qtl_marker |
To | RM168 | SSR | Oryza sativa Japonica Group | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000269) | Brondani-C et al., 2002 (IAGP) |
Plant Structure | (PO:0009010) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007038) | Gramene curators, 2007 (IC) |
Growth Stage | (GRO:0007045) | Gramene curators, 2007 (IC) |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Brondani-C et al., 2002 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr3 | 23,126,064 | 23,126,256 | ~160K SNPs x 20 accessions (McNally 2... | 0 | |
chr3 | 23,126,064 | 23,126,256 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr3 | 23,126,064 | 23,126,256 | Huang X, et al, Nat Genetics 2010 Nov... | 1 | Search for SNPs |
chr3 | 23,126,064 | 23,126,256 | RiceDiversity 44K SNP assay, 34 trait... | 1 | Search for SNPs |
chr3 | 23,126,064 | 23,126,256 | RiceDiversity 44K SNP assay, 34 trait... | 0 |