QTL Accession ID | AQAI012 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | LFAR | ||||
Trait Name | leaf area | ||||
Published Symbol | qTL6-1 | ||||
Trait Synonym(s) |
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Trait Category | Anatomy | ||||
Chromosome | 6 | ||||
Comments | The third leaf area was measured as source capacity and used for QTL analysis. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 6 | 6,927,624-6,928,661 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNHZAU Zh97/Ming63 RI QTL 2002 | BNL6.32 | 6 | 82.9-114.1 cM | View Comparative Map | |||
|
Name | Chromosome | Start | Stop |
---|---|---|---|
AQAI012 | 6 | 82.9 | 114.1 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RZ667 | RFLP | Oryza sativa | qtl_marker |
To | C751 | RFLP | Oryza sativa | qtl_marker |
To | RG424 | RFLP | Oryza sativa | qtl_marker |
To | G200 | RFLP | Oryza sativa | qtl_marker |
To | R2549 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000540) | Cui-H et al., 2003 (IAGP) |
Plant Structure | (PO:0009025) | Gramene curators, 2007 (IC) |
Plant Growth and Development Stage | (PO:0007130) | Gramene curators, 2007 (IC) |
(PO:0007134) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007139) | Gramene curators, 2007 (IC) |
(GRO:0007140) | Gramene curators, 2007 (IC) | |
Environment | (EO:0007403) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Cui-H et al., 2003 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr6 | 6,927,624 | 6,928,661 | ~160K SNPs x 20 accessions (McNally 2... | 2 | Search for SNPs |
chr6 | 6,927,624 | 6,928,661 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr6 | 6,927,624 | 6,928,661 | Huang X, et al, Nat Genetics 2010 Nov... | 6 | Search for SNPs |
chr6 | 6,927,624 | 6,928,661 | RiceDiversity 44K SNP assay, 34 trait... | 6 | Search for SNPs |
chr6 | 6,927,624 | 6,928,661 | RiceDiversity 44K SNP assay, 34 trait... | 0 |