suggestions go here
Marker View
Search
Quick Search
Genomes/Ensembl
Markers/Sequences
Comparative Maps
QTL
Diversity
Genes
Germplasm
Proteins
Pathways
Plant Reactome (beta)
Ontologies
Literature
BLAST
Gramene Mart
Genomes
Arabidopsis lyrata
Arabidopsis thaliana
Brachypodium distachyon
Brassica rapa
Chlamydomonas reinhardtii
Cyanidioschyzon merolae (red algae)
Glycine max (soybean)
Hordeum vulgare (Barley)
Leersia perrieri (chr 3S)
Musa acuminata (Banana)
Medicago truncatula
Oryza barthii
Oryza brachyantha
Oryza glaberrima
Oryza glumaepatula (chr 3S)
Oryza granulata (chr 3S)
Oryza longistaminata (chr 3S)
Oryza meridionalis (chr 3S)
Oryza minutaBB (chr 3S)
Oryza minutaCC (chr 3S)
Oryza nivara (chr 3S)
Oryza officinalis (chr 3S)
Oryza punctata
Oryza rufipogon (chr 3S)
Oryza rufipogon (FPC map)
Oryza sativa Indica Group
Oryza sativa (rice)
Physcomitrella patens
Populus trichocarpa (poplar)
Selaginella moellendorffii
Setaria italica (foxtail millet)
Solanum lycopersicum (tomato)
Solanum tuberosum (Potato)
Sorghum bicolor
Vitis vinifera (grape)
Zea mays
Triticum aestivum (bread wheat)
Aegilops tauschii (wheat D-genome)
Triticum urartu (wheat A-genome progenitor)
Organelles
Species
Barley (Hordeum)
Brachypodium
Foxtail Millet (Setaria)
Maize (Zea)
Oats (Avena)
Pearl Millet (Pennisetum)
Rice (Oryza)
Rye (Secale)
Sorghum (Sorghum)
Wheat (Triticum)
Wild Rice (Zizania)
Other Oryza
Download
Download Index
FTP Site
Resources
Links Pages
Submit a Term
Newsletters
Web Services
Gene Nomenclature
About
Contact Us
About Us
Outreach Program
Brochure
Advisory Board
Collaborators
Gramene Newsletter
Cite Gramene
Help
Site Map
Help Documents
Release Notes
Tutorials and Exercises
Glossary
FAQs
Gramene Documentation
Workshop Materials
Mailing Lists
Ask Us
Feedback
Markers Home
|
Markers Search
|
Browse Map Sets
|
SSR Markers Resource
|
Microarray Probes
|
Help
|
Tutorial
|
FAQs
Find:
Type:
--Any--
AFLP
Breakpoint Interval
Centromere
Chromosomal Segment
Clone
Cytological Structure
DArT
EST
EST Cluster
FISH Probe
FPC
Gene
Gene Candidate
Gene Family
Gene Prediction
Genomic DNA
GSS
ISBP
Lapsed Locus
Maize Bin
Microarray Probe
mRNA
OVERGO
Point
Primer
Probed Site
Pseudogene
QTL
RAPD
Restriction Fragment
RFLP
SNP
SSR
STS
Telomere
Transposable Element
Undefined
Taxonomy:
E.g., "
OA_BBa0071H05,c0346J09
", "
rm*
",
Oat RFLPs like "CDO*"
, or view
help
.
Sequence Map "Oryza sativa Japonica Group-Gramene Annotated Nipponbare Sequence 2009-Chr. 1"
Map Name:
Chr. 1
Species:
Oryza sativa Japonica Group
Map Set Name:
Gramene Annotated Nipponbare Sequence 2009
Map Type:
Sequence
Start Position:
1 bp
End Position:
43,268,879 bp
CMap Map Accession:
grjp2009a-1
Mappings (27,545)
Mappings 1 to 25 of 27,545.
of 1,102. |
Next
Name
Type
Species
Start
End
CMap Link
BF292479
Aegilops speltoides
25,770,690
25,770,724
542531364
BF292158
Aegilops speltoides
16,927,822
16,928,332
542531018
BF291730
Aegilops speltoides
28,684,249
28,685,755
NA
BF291720
Aegilops speltoides
3,047,273
3,048,599
542530513
BQ159467
Aegilops speltoides
30,883,412
30,883,942
541118969
BG274556
Aegilops speltoides
22,170,799
22,172,847
544689520
BG274146
Aegilops speltoides
12,727,912
12,728,597
544689118
BF292654
Aegilops speltoides
23,291,121
23,291,541
NA
AEST055
Arabidopsis thaliana
14,512,976
14,513,336
538342443
AEST239
Arabidopsis thaliana
35,759,350
35,759,822
538342461
AEST239
Arabidopsis thaliana
35,762,929
35,763,402
538342460
AEST163
Arabidopsis thaliana
34,169,740
34,169,996
538342458
AEST163
Arabidopsis thaliana
10,098,984
10,099,313
538342456
AEST142
Arabidopsis thaliana
10,657,746
10,657,921
538342455
AEST137
Arabidopsis thaliana
42,484,562
42,484,960
538342451
AEST109
Arabidopsis thaliana
30,020,194
30,020,429
538342448
CDO251
Avena sativa
30,020,195
30,020,375
538341681
CDO920
Avena sativa
21,700,988
21,701,716
538341749
CDO1495
Avena sativa
40,962,108
40,962,275
538343195
UMN282
Avena sativa
32,077,082
32,077,331
538343302
CDO583
Avena sativa
34,167,902
34,168,119
538343390
CDO187
Avena sativa
5,908,168
5,908,270
538341675
CDO920
Avena sativa
21,701,482
21,701,719
538341748
CDO118
Avena sativa
27,625,475
27,625,559
538341669
CDO608
Avena sativa
12,871,752
12,871,783
538341740