QTL Accession ID | AQEZ001 | ||||
---|---|---|---|---|---|
Species | Oryza sativa (Rice) [ GR_tax:013681 ] | ||||
Trait Symbol | ALSN | ||||
Trait Name | aluminum sensitivity | ||||
Published Symbol | |||||
Trait Synonym(s) |
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Trait Category | Abiotic stress | ||||
Chromosome | 1 | ||||
Comments | The root length under stress condition was measured after one week Al treatment and used as a parameter to evaluate aluminum sensitivity. Four Al induced ESTs located in this region were screened by reverse Northern analysis and confirmed by Northern analysis. Two transcript-derived fragments (TDFs) regulated by Al stress, OsAR28 and OsAR16, were respectively mapped on the interval of this QTL. |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 40,343,585-40,567,354 bp | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | CNZU IR1552/Azu RI QTL 2004 | BNL6.32 | 1 | 230.5-237.8 cM | View Comparative Map | |||
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Name | Chromosome | Start | Stop |
---|---|---|---|
AQEZ001 | 1 | 230.5 | 237.8 |
Direction | Name | Type | Species | Assoc. Type |
---|---|---|---|---|
To | RG323 | RFLP | Oryza sativa | qtl_marker |
To | RZ801 | RFLP | Oryza sativa | qtl_marker |
To | RG381 | RFLP | Oryza sativa | qtl_marker |
To | RG222 | RFLP | Oryza sativa | qtl_marker |
Term Type | Term | Evidence |
---|---|---|
Trait Ontology | (TO:0000354) | Mao-C-Z et al., 2004 (IAGP) Mao-C et al., 2004 (IAGP) |
Plant Structure | (PO:0000003) | Gramene curators, 2007 (IC) |
(PO:0009011) | Gramene curators, 2007 (IC) | |
Plant Growth and Development Stage | (PO:0007033) | Gramene curators, 2007 (IC) |
(PO:0009012) | Gramene curators, 2007 (IC) | |
Growth Stage | (GRO:0007001) | Gramene curators, 2007 (IC) |
Environment | (EO:0007306) | Gramene curators, 2007 (IC) |
Species Ontology | (GR_tax:013681) | Mao-C-Z et al., 2004 (SM) Mao-C et al., 2004 (SM) |
Chr | Start | Stop | Exp | Num. SNP Positions | |
---|---|---|---|---|---|
chr1 | 40,343,585 | 40,567,354 | ~160K SNPs x 20 accessions (McNally 2... | 122 | Search for SNPs |
chr1 | 40,343,585 | 40,567,354 | '1536 chip' - 1311 SNPs x 395 rice ac... | 0 | |
chr1 | 40,343,585 | 40,567,354 | Huang X, et al, Nat Genetics 2010 Nov... | 499 | Search for SNPs |
chr1 | 40,343,585 | 40,567,354 | RiceDiversity 44K SNP assay, 34 trait... | 499 | Search for SNPs |
chr1 | 40,343,585 | 40,567,354 | RiceDiversity 44K SNP assay, 34 trait... | 29 | Search for SNPs |