Zea mays mRNA "AY109400"

ID	776582
Name	AY109400 (GenBank Accession )
Synonyms (0)	None.
GenBank GI	21213111
GenBank Version	AY109400.1
MaizeGDB cDNA - EST	CL1052_1
MAIZEGDB EST	CL1052_1
Type	mRNA
Species	Zea mays (Maize) [ GR_tax:014450 ]
Germplasm
Description	Zea mays CL1052_1 mRNA sequence.
Tags ()	None

Source/Library

Details

Marker Created:
Marker Updated:
Internal Marker Accession:	AY109400
Date Created
Date Updated
Ec Number
Allele
Bound Moiety
Cell Line
Cell Type
Chromosome
Citation
Clone
Clone Lib	Maize Mapping Project/DuPont Cornsensus Library
Codon Start
Comment	If you are interested in getting corresponding physical clones, these are publicly available from ZmDB and may be found by BLAST searching at MSL, maizemap.org; ZmDB, www.zmdb.iastate.edu; TIGR, www.tigr.org; or NCBI, www.ncbi.nlm.nih.gov. When the source of the maize cDNA sequences is either Virginia Walbot, Stanford or Pat Schnable, Iowa State, then clones may be requested from ZmDB: www.zmdb.iastate.edu.
Compare
Cons Splice
Country
Dev Stage
Ecotype
Evidence
Exception
Function
Gene
Germline
Haplotype
Insertion Seq
Isolate
Isolation Source
Keyword	HTC
Lab Host
Label
Locus Tag
Macronuclear
Map
Mod Base
Mol Type	mRNA
Note	this sequence is part of a project of EST assemblies resulting from the application of public contigs to seed DuPont contigs; this resource was assembled by DuPont as part of a collaboration for the overgo addressing of BACs in conjunction with the Maize Mapping Project
Number
Origin
Phenotype
Plasmid
Pop Variant
Product
Protein Id
Pseudo
Rearranged
Ref Authors	Coe,E.H.
Ref Location	Submitted (25-APR-2002) Maize Mapping Project, University of Missouri, Columbia, MO 65211, USA
Ref Pubmed
Ref Title	Direct Submission
Ref Year	2004
Rpt Family
Rpt Type
Rpt Unit
Sex
Specimen Voucher
Standard Name
Sub Clone
Sub Species
Sub Strain
Tissue Lib
Tissue Type
Transl Except
Transl Table
Translation
Transposon
Variety

Database Cross-References (2)

PubMed	15020742
Gramene Literature	Gardiner-J, Schroeder-S, Polacco-M-L, Sanchez-Villeda-H, Fang-Z, Morgante-M, Landewe-T, Fengler-K, Useche-F, Hanafey-M, Tingey-S, Chou-H, Wing-R, Soderlund-C, "Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization", Plant physiology, 2004, vol. 134, pp. 1317-1326

Sequences (2)

mRNA Sequence (1)

>AY109400 Zea mays mRNA [2031 bp].

 
          GTGGGCGTACCAGGTTACGAGGGCCGCGTCCACCAACGGCCGGGGCCCCTCCATCTGGGATTCATTCGCGCACGTCCCAG
GAAATATTGCAGGGAATCAAAATGGAGACGTTGCAGTGGATCAATACCATCGCTACAAGGAAGACGTCGATCTCATGAAA
AGTTTGAACTTTGATGCCTACCGGTTCTCAATCTCATGGTCCAGGATCTTCCCGGATGGCGAAGGGAAAGTCAATCCAGA
AGGTGTAGCGTATTACAATAATTTGATAAACTATCTGCTTCAGAAAGGCATGACTCCTTACATCAACCTTTACCACTATG
ATCTTCCTCTTGCGCTTGAGAAGAAATATGGAGGGTGGTTAAGCGCGAAGATGGCGGACTTGTTTACAGACTATGCTGAC
TTCTGTTTTAAGACCTACGGCGATCGCGTAAAGCACTGGTTTACATTCAATGAGCCAAGGATAGTAGCGCTACTTGGCTA
TGACACAGGGTCAAATCCTCCTCAAAGGTGCACCAGATGTGCTGCTGGTGGGAATTCAGCAACGGAACCTTATATTGTTG
CTCATAATTTTCTCTTGGCACATGCTACTGCAGTTGCAAGATACCGTACAAAATATCAGGCTGCTCAGAAGGGTAAGGTC
GGAATAGTCCTGGACTTCAACTGGTACGAGGCTCTTACAAACTCACCTGATGACCAAGCAGCAGCCCAAAGAGCCAGGGA
CTTCCACATTGGCTGGTTTGNTGATCCAGCACGAGACGGACACTATCCACAGATAATGCAAGATCTCGTGAAGGAGAGGC
TGCCCAGGTTCACTCCTGAGCAGGCTAAACTGGTGAAGGGCTCGGCAGACTACATCGGTATCAACGAGTACACATCCAGC
TACATGAAGGGGCAGAAGCTGGTCCAGCTGGCGCCCAGTAGCTACTCTGCCGATTGGCAGGTTCAATATGGCATGGCACG
CAATGGCAAACCGATTGGACCACAGGCGAATTCTAAGTGGCTCTACATCGCCCCGACGGGGATGTACGGGTGCGTGAACT
ACCTCAAGGAGAAGTATGGGAATCCAACGATCTACATAACGGAGAACGGAATGGACCAGCCTGGAAACTTGACCCGAGAC
CAGTACCTGCGCGACGCCACGAGGGTGCGGTTCTACAGGAGCTACATCGGCCAGCTGAAGAAGGCCATAGACCAGGGAGC
GAACGTGGCTGGCTACTTCGCCTGGTCTCTCCTCGACAACTTCGAGTGGCTGGCAGGGTACTCGTCCAAGTTCGGCATCG
TCTACGTGGACTTCAACACGCTCGAACGCCACCCGAAGGCGTCGGCCTACTGGTTCAGGGACATGCTTCAGAAGCATTGA
GATCTCCAGAGCCGAGCCTGAGCACGGAAGGTACCATTTTGTTCAGCTTCGCCTAGTGTTTGGGATGGCCCAATGGTTCA
AATCCGGCTCAGTGCCTGGCTACCAAAATGGGAACAAAGGACAGCTACCCCGATCAAATGTGATGTTGTTNNNNNNNNNN
NNNNNNNTCTCTGGAGTTTGAGCTGTGGTTATTTTATCGTGTTGGTTGATCGTGTTTGAAATGCTTAATTCAGGACTGTG
ACATCTCGAGTTGTTTTCTATATGATAGCTGCTGTATCATTGAGTTTGCTGTTTACAAATGGATTGATGATGATGGAGAA
TGCTGAACTGGTGTTTATTATCTCCCTTTCTGATTTAGGAGTTTTATTTGCAGGGCATGAAGATCTTCGGAGAACTCGAG
TGCTGTTCGGAGCGCTCATCTGATATATTAAAATGTATTCCTCATTAGCTTGAGATTCGCTCCTTGGAGCAAACTTTTAA
ATGTAACGCTGGAGTTGTAAGGCGATTTCATACAGTGAGGTAGAAACCAACCATGTATTTGTCGTTTCAGGCTTATGATT
CCATGAAGAGTTGTTGGAGCACATTTCTGGGATGTCGGTTGAAGATACAAGGAAGTACACACTCAAGTAAAGTCCATATA
CAAGACTATAAACAACTCATATTTTAGGCTC

Related Sequence (1)

>CL1052_1_ov Zea mays subsp. mays OVERGO [40 bp]. Associated to 'AY109400' via contained_in_sequence

 
          CGTTGCAGTGGATCAATACCATCGCTACAAGGAAGACGTC

Align All Sequences

Map Positions (6)

unclassified (4)

Map Type

Map Set

Name

Map

Position

Ext. Links

Physical

AGI FPC Oct 2004

p-bnl6.32

ctg50

226-230 bands

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Details

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p-bnl6.32

ctg158

355-390 bands

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Details

CMap Preview

p-bnl6.32

ctg346

505-535 bands

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Details

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Curated AGI FPC Oct 2004

p-bnl6.32

ctg50.1

226-230 bands

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Details

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Oryza sativa Japonica Group (2)

Map Type

Map Set

Name

Map

Position

Ext. Links

Sequence

Gramene Annotated Nipponbare Sequence 2009

BNL6.32

Chr. 1

76,094-76,431 bp

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Details

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BNL6.32

Chr. 3

28,233,713-28,236,246 bp

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Details

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Associations (1)

Species	Type	Name	Assoc. Type
Zea mays subsp. mays	OVERGO	CL1052_1_ov	contained_in_sequence

Associated Ontologies (0)

Images (0)