ID | 10655 | ||
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Name | RM128 | ||
Synonyms (2) |
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Type | SSR | ||
Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] | ||
Germplasm | |||
Description | |||
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | RM128 |
Repeat Motif | (GAA)9 |
Anneal Temperature | 55 |
Expected PCR Product Size | 157 |
Sequence Source | |
Linkage Group | |
Remarks |
Gramene Literature | Akagi-H, Yokozeki-Y, Inagaki-A, Fujimura-T, "Microsatellite DNA markers for rice chromosomes", Theoretical and applied genetics, 1996, vol. 93, pp. 1071-1077 |
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Gramene Diversity Rice Marker | 379 |
AAAAAGCTTGGGTGATTTCTTGGAAGCGAAGAGTGAGGGGAGAAGAAGAAGAAGAAGAAGAAGAAGAGGGGGGAGGAGGA
GGAGCAGCATGGCTGAGCACAAGGAGGAGCAGTCGGTGATGGAGAAGCTCTCCGAGAAGCTGCACGGCGACTCCTCGTCG
TCTTCCTCGGACTCGGACGACGACAAGAAGGGTTCCTCCTCGTCGTCGGCGGCGGCGGCCATNAAGGCCAAGATCTACCG
CCTCTTCGGCCGCGAGAGGCCCGTCCACTCCGTCCTCGGCGGCGGCAAGCTGCTGATCTCGTGCTATGGAGGAACAAGAA
GATCTNCGGTGGGGTGCTCGCCGGAGCCACGGCCATCTTGCTACTCTTCGAGATCATNGAGTACCACCTNCTNAACTTTG
TGT
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 1 | 30,737,705-30,737,861 bp | View Comparative Map | |||
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BNL6.32 | Chr. 1 | 30,737,713-30,737,807 bp | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | CIAT SSR 2006 | BNL6.32 | 1 | 151.6-151.6 cM | View Comparative Map | |||
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Cornell SSR 2001 | BNL6.32 | 1 | 134.8-134.8 cM | View Comparative Map | ||||
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IRMI 2003 | BNL6.32 | 1 | 126.5-126.5 cM | View Comparative Map | ||||
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QTL | AGEBC KDM105/CT999 RI QTL 2000 | BNL6.32 | 1b | 30.4-30.4 cM | View Comparative Map | |||
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CNHAU Zhen97/ H94 QTL 2005 | BNL6.32 | 1 | 132.4-132.4 cM | View Comparative Map | ||||
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CNNAU IR50/Tatsumimochi/Miyukimochi SSR QTL 2006 | BNL6.32 | 1 | 152.9-152.9 cM | View Comparative Map | ||||
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CNYU Bal/Nan//Bal BC1 QTL 2001 | BNL6.32 | 1a | 28.2-28.2 cM | View Comparative Map | ||||
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CNZU IR1552/Azu RI QTL 2003 | BNL6.32 | 1 | 121.4-121.4 cM | View Comparative Map | ||||
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CNZU IR1552/Azu RI QTL 2004 | BNL6.32 | 1 | 121.4-121.4 cM | View Comparative Map | ||||
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Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 1 | 134.8-134.8 cM | View Comparative Map | ||||
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Cornell Jef/Oruf BC QTL 2003 | BNL6.32 | 1 | 123.7-123.7 cM | View Comparative Map | ||||
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IRRI IR622/IR600 QTL 2003 | BNL6.32 | 1 | 204.1-204.1 cM | View Comparative Map | ||||
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IRRI Lem/Teq RI QTL 2001 | BNL6.32 | 1 | 237.9-237.9 cM | View Comparative Map | ||||
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LSU Caiapo/IRGC103544 QTL 2004 | BNL6.32 | 1 | 35.2-35.2 cM | View Comparative Map | ||||
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M202/IR50 UCD QTL 2003 | BNL6.32 | 1 | 121.7-121.7 cM | View Comparative Map | ||||
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TKU Integrated QTL 2002 | BNL6.32 | 1 | 89.8-89.8 cM | View Comparative Map | ||||
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TNCGEB CT9993/IR6226 QTL 2004 | BNL6.32 | 1 | 113.7-113.7 cM | View Comparative Map | ||||
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Species | Type | Name | Assoc. Type |
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Oryza sativa | QTL | AQA018 | qtl_marker |
Oryza sativa | QTL | AQAQ008 | qtl_marker |
Oryza sativa | QTL | AQCU132 | qtl_marker |
Oryza sativa | QTL | AQDU006 | qtl_marker |
Oryza sativa | QTL | AQEL016 | qtl_marker |
Oryza sativa | QTL | AQFE024 | qtl_marker |
Oryza sativa | QTL | AQFE025 | qtl_marker |
Oryza sativa | QTL | AQFE026 | qtl_marker |
Oryza sativa | QTL | AQFE039 | qtl_marker |
Oryza sativa | QTL | AQFE040 | qtl_marker |
Oryza sativa | QTL | AQFR014 | qtl_marker |
Oryza sativa | QTL | AQFR044 | qtl_marker |
Oryza sativa | QTL | AQFU020 | qtl_marker |
Oryza sativa | QTL | AQFU026 | qtl_marker |
Oryza sativa | QTL | AQGA029 | qtl_marker |
Oryza sativa | QTL | AQU024 | qtl_marker |
Oryza sativa Japonica Group | SSR | AUT11648 | equivalent_to |
Oryza sativa | QTL | CQAA6 | qtl_marker |
Oryza sativa | QTL | CQAE15 | qtl_marker |
Oryza sativa | QTL | CQAE19 | qtl_marker |
Oryza sativa | QTL | CQAE20 | qtl_marker |
Oryza sativa | QTL | CQAE24 | qtl_marker |
Oryza sativa | QTL | CQAE5 | qtl_marker |
Oryza sativa Japonica Group | EST | D40151 | contained_in_sequence |
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