ID | 46769 |
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Name | CQM3 (QTL ACCESSION ) |
Synonyms (1) | CQM3-EBSABR |
Published Symbol | esa-3 |
TO TERM | TO:0000416 (embryosac abortion) |
Trait Name | embryosac abortion |
Trait Symbol | EBSABR |
Type | QTL |
Species | Oryza sativa (Oryza sativa) [ GR_tax:013681 ] |
Germplasm | |
Description | The frequency of embryo-sac abortion was determined for every genotype; panicles at the flowering stage were used for the microscope observation, and 50–124 ovaries were checked per genotype. Cytological observations were made on serial sections of each ovary. Interval QTL mapping was carried out using the software MAPMAKER/QTL ver. 1.1 with a LOD threshold of 2.0 for declaring the presence of putative QTLs. The loci explain 24% of the total phenotypic variation (PVE). |
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | CQM3 |
Chromosome | 12 |
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 12 | 24,585,902-24,586,392 bp | View Comparative Map | |||
|
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
---|---|---|---|---|---|---|---|---|
QTL | IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 12 | 27.2-40.7 cM | View Comparative Map | |||
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Species | Type | Name | Assoc. Type |
---|---|---|---|
Oryza sativa | RFLP | RG323 | qtl_marker |
Oryza sativa | RFLP | RG403 | qtl_marker |
Oryza sativa | RFLP | RG901 | qtl_marker |
Oryza sativa | RFLP | RG463 | qtl_marker |
Oryza sativa Indica Group | SSR | RM235 | qtl_marker |
Oryza sativa | RFLP | G148 | qtl_marker |
Term Type | Term Name | Term Accession | |
---|---|---|---|
Growth Stage | B-reproductive stage | GRO:0007140 | Search |
Plant Growth and Development Stage | endosperm development stage | PO:0007633 | Search |
Plant Structure | plant embryo | PO:0009009 | Search |
Environment | unknown environment | EO:0007403 | Search |
Trait | embryosac abortion | TO:0000416 | Search |
Taxonomy | Oryza sativa | GR_tax:013681 | Search |