ID | 4640 | ||||||||
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Name | CDO590 (GRAINGENES PROBE) | ||||||||
Synonyms (7) |
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Type | RFLP | ||||||||
Species | Avena sativa (Oat) [ GR_tax:012534 ] | ||||||||
Germplasm | |||||||||
Description | |||||||||
Tags () | None |
Marker Created: | |
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Marker Updated: | |
Internal Marker Accession: | CDO590 |
DNA Treatment | |
Source Type | cDNA |
Source Tissue | etiolated leaf |
Source Treatment | etiolated |
Vector | pBluSK |
Vector Antibiotic Resistance | Ampicillin |
Fragment Size | 0 |
Vector Excision Enzyme | EcoRI/XhoI |
Vector Primers | M13 forward/M13 reverse |
Overgo1 | |
Overgo2 |
GGAGTTATCATCGGATTCATCTCAGCATGTTCGCTCAGCTTTGGCTTCAGTCATTATGGGAATGGCTCCTGTTTTGGGGA
AGGATGCTACCATTGAACAACTTCTTCCTATTTNTCTTTCTTTGCTCAAGGATGAATTTCCTGATGTTCGACTCATCAT
Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell Diploid 1995 | BNL6.32 | A | 56.2-56.2 cM | View Comparative Map | |||
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Oat, KxO, 2003 | BNL6.32 | 3+38 | 66.8-66.8 cM | View Comparative Map | ||||
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BNL6.32 | 22_44+18 | 143-143 cM | View Comparative Map | |||||
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BNL6.32 | 24_26_34 | 70.4-70.4 cM | View Comparative Map | |||||
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QTL | Cornell Kan/Ogl QTL 1995 | BNL6.32 | 3 | 28.5-28.5 cM | View Comparative Map | |||
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BNL6.32 | 24 | 29.9-29.9 cM | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell SSR 2001 | BNL6.32 | 9 | 1.8-1.8 cM | View Comparative Map | |||
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IGCN 1998 | BNL6.32 | 9 | 57.1-57.1 cM | View Comparative Map | ||||
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JRGP RFLP 2000 | BNL6.32 | 9 | 0.8-0.8 cM | View Comparative Map | ||||
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QTL | CIRAD IR64/Azu DH QTL 2003 | BNL6.32 | 9 | 2.1-2.1 cM | View Comparative Map | |||
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CNYU Naj11/Bal DH QTL 1999 | BNL6.32 | 9 | 0-0 cM | View Comparative Map | ||||
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Cornell IR64/Azu DH QTL 2001 | BNL6.32 | 9 | 1.8-1.8 cM | View Comparative Map | ||||
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Cornell Jef/Oruf BC QTL 2003 | BNL6.32 | 9 | 0.9-0.9 cM | View Comparative Map | ||||
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IGCAS Jas85/Lem F2 QTL 2000 | BNL6.32 | 9 | 103.5-103.5 cM | View Comparative Map | ||||
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IGCN ZYQ18/JX17 DH QTL 1998 | BNL6.32 | 9 | 57.1-57.1 cM | View Comparative Map | ||||
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IRRI IR622/IR600 QTL 2003 | BNL6.32 | 9 | 13.3-13.3 cM | View Comparative Map | ||||
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IRRI IR64/Azu DH QTL 2003 | BNL6.32 | 9 | 16.1-16.1 cM | View Comparative Map | ||||
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IRRI Pal/IR42 F2 QTL 1995 | BNL6.32 | 9 | 0-0 cM | View Comparative Map | ||||
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JIC IR20/63-83 F2 QTL 1998 | BNL6.32 | 9 | 15.3-15.3 cM | View Comparative Map | ||||
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JRGP Nip/Kas F2 QTL 2000 | BNL6.32 | 9 | 0.8-0.8 cM | View Comparative Map | ||||
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Zejiang IR64/Azu DH QTL 2001 | BNL6.32 | 9 | 2.5-2.5 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | IGCN sativa/eichingeri RFLP | BNL6.32 | 9 | 17.9-17.9 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Cornell RFLP 1994 | BNL6.32 | 9 | 9.8-9.8 cM | View Comparative Map | |||
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Cornell RFLP 2001 | BNL6.32 | 9 | 21.4-21.4 cM | View Comparative Map | ||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | Klein 2004 | BNL6.32 | LG-10 | 10.2-10.2 cM | View Comparative Map | |||
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Mace 2009 | BNL6.32 | 10 | 0-4.4 cM | View Comparative Map | ||||
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BNL6.32 | 10 | 6.5-6.5 cM | View Comparative Map | |||||
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BNL6.32 | 10 | 65.2-65.9 cM | View Comparative Map | |||||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Genetic | UMC 1998 | BNL6.32 | 9 | 63.7-63.7 cM | View Comparative Map | |||
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Map Type | Map Set | Name | Map | Position | Ext. Links | |||
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Sequence | Gramene Annotated Nipponbare Sequence 2009 | BNL6.32 | Chr. 9 | 3,759,711-3,760,000 bp | View Comparative Map | |||
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Species | Type | Name | Assoc. Type |
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Oryza sativa | QTL | AQBM008 | qtl_marker |
Oryza sativa | QTL | AQBR002 | qtl_marker |
Oryza sativa | QTL | AQBY003 | qtl_marker |
Oryza sativa | QTL | AQCN011 | qtl_marker |
Oryza sativa | QTL | AQCN012 | qtl_marker |
Oryza sativa | QTL | AQCN013 | qtl_marker |
Avena sativa | QTL | AQDF179 | qtl_marker |
Avena sativa | QTL | AQDF180 | qtl_marker |
Avena sativa | QTL | AQDF187 | qtl_marker |
Avena sativa | QTL | AQDF188 | qtl_marker |
Avena sativa | QTL | AQDF200 | qtl_marker |
Avena sativa | QTL | AQDF202 | qtl_marker |
Avena sativa | QTL | AQDF232 | qtl_marker |
Avena sativa | QTL | AQDF240 | qtl_marker |
Zea mays subsp. mays | Maize Bin | Bin 9.02 | bin_marker |
Triticum aestivum | Breakpoint Interval | C-5DL1-0.60 | Wheat-EST-BI |
Oryza sativa | QTL | DQE28 | qtl_marker |
Oryza sativa | QTL | DQE29 | qtl_marker |
Avena sativa | Probed Site | cdo590(ppr) | maizegdb_to_gramene |
Avena sativa | EST | AA231711 | related_sequence |
CDO590 BROWS Autorad: Survey blot of the probe CDO590 for the comparative barley/rice/oat/wheat/sugarcane project | |
CDO590 SL Autorad: Survey blot of the probe CDO590 for the BS125/2/BS125/WLO2 population |