Accession Name | Teqing |
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Institute(s) Holding Accession | |
Accession Number | PI536047 |
Synonym(s) | |
Germplasm Type | N/A |
Genus | Oryza |
Species | sativa |
Subspecies | Indica |
Subtaxa | |
Taxonomy Cross-Reference | GR_tax:013682 |
Title | Design | Polymorphism Type | Allele Scoring Protocol | PI(s) | Comments | Data |
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Genetic structure and diversity in Oryza sativa L. | 234 rice accessions from wide geographical regions of the world genotyped at 169 nuclear and 2 chloroplast loci to elucidate diversity within subspecies Oryza sativa indica and japonica | N/A | McCouch-S-R, Tai-T-H | Prediction of population structure was model-based (STRUCTURE) and based on data from 169 genomic SSRs. Reference: Garris et al., 2005. | Show Allele Data | |
Evaluation of Genetic diversity in Rice Subspecies Using Microsatellite Markers | 38 U.S rice cultivars and 2 wild relatives were genotyped by means of 111 genomic SSR markers | N/A | Mackill-D-J | Population structure was inferred using genetic-distance method with 111 SSR markers. Reference: Ni et al., 2002. | Show Allele Data | |
Global dissemination of a single mutation conferring white pericarp in rice | Genotyping of 440 geographically and genetically diverse rice cultivars using the rice indel RID 12 primers | N/A | Sweeney/McCouch | Reference: Sweeney et. al. PLoS Genetics, 2007; Genotyping analysis revealed a single 14-bp deletion in the Rc gene is responsible for white pericarp in 97.9% of rice | Show Allele Data |
Stock Source | Seed Lot ID | Comments |
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NSGC | RA5130 | |
McCouch Lab | RA5130 | new as of Sweeney et. al. PMID:17696613 |
Trait | Value | Experiment |
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pericarp color | white | Global dissemination of a single mutation conferring white pericarp in rice |
Trait Name | Trait Protocol | Trait Values |
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pericarp color | Ten seeds per plant were dehulled and then visually inspected; PATO:0000322, PATO:0000323; ECO:0000002; GAZ:00004426 |
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Gazetteer Ontology | N/A |
Elevation | |
Latitude | NA |
Longitude | NA |
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