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Release Notes
Oryza sativa Germplasm "Nipponbare"
| Accession Name | Nipponbare |
|---|---|
| Institute(s) Holding Accession | |
| Accession Number | PI514663 |
| Synonym(s) | |
| Germplasm Type | Traditional cultivar/landrace |
| Genus | Oryza |
| Species | sativa |
| Subspecies | |
| Subtaxa | |
| Taxonomy Cross-Reference | GR_tax:013681 |
Experiments (2)
| Title | Design | Polymorphism Type | Allele Scoring Protocol | PI(s) | Comments | Data |
|---|---|---|---|---|---|---|
| Rapid survey for presence of a blast resistance gene Pi-ta in rice cultivars using the dominant DNA markers derived from portions of the Pi-ta gene | 141 accessions of rice, Oryza sativa, collected from major rice-producing regions throughout the world, 'Katy', 'Drew', and 'Kaybonnet' (resistant to M. grisea) and Nipponbare and a California cultivar 'M-202' (susceptible to M. grisea) were used as positive and negative control respectively in the pathogenicity assay. M. grisea race IC-17 containing AVR-Pita was used in the assay. | N/A | Y. Jia | Reference: Wang Z, et. al. [Gramene Lit ID 54913] | Show Allele Data | |
| Haplotype Diversity at the Pi-ta Locus in Cultivated Rice and Its Wild Relatives | A panel of 48 Oryza accessions were evaluated for disease resistance againt Magnaporthe oryzae (formerly Magnaporthe grisea). The accessions were also sequenced to investigate the natural diversity present in the Pi-ta gene. | N/A | Dr. Yulin Jia | Reference: Gramene Lit ID 54737 | Show Allele Data |
Related Stocks (2)
| Stock Source | Seed Lot ID | Comments |
|---|---|---|
| PI514663 | ||
| Yulin Jia Lab | PI514663 |
Traits (3)
| Trait | Value | Experiment |
|---|---|---|
| blast disease | susceptible toward | Rapid survey for presence of a blast resistance gene Pi-ta in rice cultivars using the dominant DNA markers derived from portions of the Pi-ta gene |
| blast disease | "susceptible toward M. grisea race IC17 , isolate ZN60" | Haplotype Diversity at the Pi-ta Locus in Cultivated Rice and Its Wild Relatives |
| blast disease | susceptible toward M. grisea race IE1k isolate TM2 | Haplotype Diversity at the Pi-ta Locus in Cultivated Rice and Its Wild Relatives |
Traits UOM (1)
| Trait Name | Trait Protocol | Trait Values |
|---|---|---|
| blast disease | PATO:0001178; resistant to; ECO:0000002; direct assay result; EO:0007226; Magnaporthe grisea; "Phenotypes (resistance or susceptibility) were scored 7 days after inoculation. Resistance was scored based on the absence of visible infection and conidia in inoculated tissue, while susceptibility was scored by the presence of lesion (size >3 mm in length) and the presence of conidia in the lesions." |
Collection Information
| Collector | |
|---|---|
| Collection Number | |
| Collection Source | |
| Collection Code | |
| Collection/Release date |
Locality
| Country | |
|---|---|
| ISO3166 Country Code | |
| State/Province | |
| City | |
| Locality | |
| Gazetteer Ontology | N/A |
| Elevation | |
| Latitude | NA |
| Longitude | NA |
| Map |
